Thursday, January 27, 2011

Analysis of nucleosome positioning determined by DNA helix curvature in the human genome

Hongde Liu, Xueye Duan, Shuangxin Yu and Xiao Sun.

BMC Genomics 2011, 12:72doi:10.1186/1471-2164-12-72
Published: 27 January 2011

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Saturday, January 22, 2011

Dedifferentiation, transdifferentiation and reprogramming: three routes to regeneration

Nature Reviews Molecular Cell Biology 12, 79-89 (February 2011) | doi:10.1038/nrm3043

Chris Jopling1, Stephanie Boue1 & Juan Carlos Izpisua Belmonte1,2
1. Center of Regenerative Medicine in Barcelona. 2. Salk Institute for Biological Studies, La Jolla, California.

Friday, January 21, 2011

[The various forms of left ventricular hypertrophy : Diagnostic value of echocardiography.]

Herz. 2011 Jan 20. [Epub ahead of print]

Article in German

Weidemann F, Störk S, Herrmann S, Ertl G, Niemann M.

Medizinische Klinik und Poliklinik I, Herz- und Kreislaufzentrum, Universität Würzburg, Oberdürbacherstr. 6, 97080, Würzburg, Deutschland

Keywords:Left ventricular hypertrophy, echocardiography, advanced imaging modalities, hypertrophic obstructive cardiomyopathy, systolic function, thickened septum, concentric left ventricular hypertrophy, Friedreich cardiomyopathy, left ventricular hypertrophy, sparkling granular texture, early diagnosis.

Tuesday, January 18, 2011

Systems biological approach on neurological disorders: a novel molecular connectivity to aging and psychiatric diseases

BMC Systems Biology 2011, 5:6doi:10.1186/1752-0509-5-6

Shiek S.S.J Ahmed, Abdul R. Ahameethunisa, Winkins Santosh, Srinivasa Chakravarthy and Suresh Kumar

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This study improves the understanding of the complex interactions that occur between neurological and psychiatric diseases with aging, which lead to determine the diagnostic markers. Also, the disease-disease association results could be helpful to determine the symptom relationships between neurological and psychiatric diseases. Together, our study presents many research opportunities in post-genomic biomarker development.

"this approach provides the additional information that PDHB is not only associated with Parkinson’s disease but also associated with Athetosis and Friedreich Ataxia"

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Information from cochlear potentials and genetic mutations helps localize the lesion site in auditory neuropathy

Genome Med 2010, 2:91 doi:10.1186/gm212

Rosamaria Santarelli, Department of Medical and Surgical Specialities, Service of Audiology and Phoniatrics, University of Padua

Keywords: Auditory neuropathy (AN), disruption of auditory nerve activity,  impairment of speech perception,  hearing loss, abnormality of auditory brainstem potentials, preserved outer hair-cell activities, multisystem involvement,  peripheral and optic neuropathies, abnormal cochlear potentials have been recorded from patients, genetically based auditory neuropathies,  molecular mechanisms.

Saturday, January 15, 2011

In Focus: Friedreich’s Ataxia, MDA Special Report on Friedreich’s Ataxia

A new MDA special report on Friedreich’s ataxia (FA) is now available online.  The report provides a wide range of information about FA, including research news, medical management updates and personal stories from people affected by the disease.

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Friday, January 14, 2011

Friedreich's Ataxia (GAA)n•(TTC)n Repeats Strongly Stimulate Mitotic Crossovers in Saccharomyces cerevisae

PLoS Genetics

Wei Tang1, Margaret Dominska1, Patricia W. Greenwell1, Zachary Harvanek1, Kirill S. Lobachev2, Hyun-Min Kim2¤, Vidhya Narayanan2, Sergei M. Mirkin3, Thomas D. Petes1*
1 Department of Molecular Genetics and Microbiology, Duke University, Durham, North Carolina, United States of America, 2 School of Biology and Institute for Bioengineering and Bioscience, Georgia Institute of Technology, Atlanta, Georgia, United States of America, 3 Department of Biology, Tufts University, Medford, Massachusetts, United States of America

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 Although meiotic recombination has been much more studied than mitotic recombination, mitotic recombination is a universal property. Meiotic recombination rates are quite variable within the genome, with some chromosomal regions (hotspots) having much higher levels of exchange than other regions (coldspots). For mitotic recombination, although some types of DNA sequences are known to be associated with elevated recombination rates (highly-transcribed genes, inverted repeated sequences), relatively few hotspots have been described. In this report, we show that a 690 base pair region consisting of 230 copies of the (GAA)n•(TTC)n trinucleotide repeat stimulates mitotic crossovers in yeast 10,000-fold more strongly than an “average” yeast sequence. This sequence is a preferred site for chromosome breakage in stationary phase yeast cells. Our findings may be relevant to understanding the expansions of the (GAA)n•(TTC)n trinucleotide repeat tracts that are associated with the human disease Friedreich's ataxia.

Thursday, January 13, 2011

Skin provides Australia's first adult stem cells for rare genetic disease

January 13, 2011

(PhysOrg.com) -- Scientists have developed Australia’s first adult induced pluripotent stem cell lines using skin biopsies from patients with the rare genetic disease Friedreich Ataxia (FA).

Newspaper article based on a paper published in Stem Cell Reviews and Reports the last December 22 (Generation of Induced Pluripotent Stem Cell Lines from Friedreich Ataxia Patients.)

Monday, January 10, 2011

Localization of sequence variations in PGC-1alpha influence their modifying effect in Huntington disease

Molecular Neurodegeneration 2011, 6:1doi:10.1186/1750-1326-6-1

Hong Van B Che, Silke Metzger, Esteban Portal, Carolin Deyle, Olaf Riess and Huu Phuc Nguyen.

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Results
Two SNPs, one in the promoter and one in the transcribed region of the gene, showed a significant effect on the AAO. While the minor allele of SNP rs7665116 (g.38570C), located in the transcribed gene region, was associated with a delay in disease onset, especially in HD patients with Italian ancestry, the minor allele of SNP rs2970870 (g.-1437C) in the promoter region leads to an earlier onset of HD in its homozygous state. Additionally, global testing of haplotype block 2, which covers the main part of the transcribed region of the gene, revealed an association between block 2 haplotypes and the disease onset.

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Saturday, January 8, 2011

Preventing the ubiquitin/proteasome-dependent degradation of frataxin, the protein defective in Friedreich’s Ataxia

Human Molecular Genetics doi:10.1093/hmg/ddq566

Alessandra Rufini, Silvia Fortuni, Gaetano Arcuri, Ivano Condo’, Dario Serio, Ottaviano Incani, Florence Malisan, Natascia Ventura, Roberto Testi

kEYWORDS: Friedreich’s Ataxia (FRDA),frataxin, mitochondrial defects, oxidative damage, frataxin stability and degradation, ubiquitin-proteasome system, K147, K147R substitution, aconitase activity, ATP levels, therapeutic potential, frataxin degradation pathway.